If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ), 'gf_id' => 'HOM05D000842', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000842' ), 'data_identifier' => 'HOM05D000842', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000842', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '708', 'num_species' => '96' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p14010' => 'bna', 'A05p15310' => 'bna', 'A05p17650' => 'bna', 'A05p34700' => 'bna', 'A06p00370' => 'bna', 'A06p28600' => 'bna', 'A07p33810' => 'bna', 'Aa31LG10G960' => 'aar', 'Aa31LG11G1590' => 'aar', 'Aa31LG2G3540' => 'aar', 'Aa31LG5G10950' => 'aar', 'Aa31LG8G1970' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.3775' => 'aag', 'Actinidia00874' => 'ach', 'Actinidia09026' => 'ach', 'Actinidia12607' => 'ach', 'Actinidia18109' => 'ach', 'Actinidia23866' => 'ach', 'Actinidia23867' => 'ach', 'Actinidia24766' => 'ach', 'Actinidia26059' => 'ach', 'Actinidia26060' => 'ach', 'Actinidia34476' => 'ach', 'Actinidia39116' => 'ach', 'Ah.04g161920' => 'amhyb', 'Ah.08g215220' => 'amhyb', 'Ah.08g216140' => 'amhyb', 'Ah.09g229360' => 'amhyb', 'Ah.15g095600' => 'amhyb', 'AL1G63210' => 'aly', 'AL2G25670' => 'aly', 'AL3G27060' => 'aly', 'AL4G24930' => 'aly', 'AL59U10010' => 'aly', 'AL8G38680' => 'aly', 'Aqoxy1G01306' => 'aox', 'Aqoxy3G00304' => 'aox', 'Aqoxy3G00420' => 'aox', 'Aqoxy4G00170' => 'aox', 'Aqoxy7G01301' => 'aox', 'Aqoxy7G02495' => 'aox', 'Aqoxy7G04070' => 'aox', 'arahy.Tifrunner.gnm1.ann1.22LF0C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.68BB74' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.B9TNKV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BXGR3K' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.FB7A1H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.GZNN80' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HU8IL4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KBYC2D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.QY6AD9' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.RVXB0U' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.VC1ZWY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.Y57QNR' => 'arhy', 'AT1G55170' => 'ath', 'AT1G67170' => 'ath', 'AT2G30120' => 'ath', 'AT3G14750' => 'ath', 'AT5G61920' => 'ath', 'ATR0121G006' => 'atr', 'ATR0307G011' => 'atr', 'ATR0680G176' => 'atr', 'ATR0691G138' => 'atr', 'Atru.chr1.3678' => 'acertr', 'Atru.chr1.4095' => 'acertr', 'Atru.chr1.4096' => 'acertr', 'Atru.chr2.1899' => 'acertr', 'Atru.chr3.4132' => 'acertr', 'Atru.chr7.442' => 'acertr', 'Atru.chr8.779' => 'acertr', 'AUR62001887' => 'cqu', 'AUR62002868' => 'cqu', 'AUR62009683' => 'cqu', 'AUR62009811' => 'cqu', 'AUR62012472' => 'cqu', 'AUR62013943' => 'cqu', 'AUR62019667' => 'cqu', 'AUR62028401' => 'cqu', 'AUR62031598' => 'cqu', 'AUR62035222' => 'cqu', 'AUR62038123' => 'cqu', 'AUR62039761' => 'cqu', 'BcaB02g10299' => 'bca', 'BcaB02g10841' => 'bca', 'BcaB03g15208' => 'bca', 'BcaB05g24241' => 'bca', 'BcaB06g25359' => 'bca', 'BcaB07g33230' => 'bca', 'BcaC01g02448' => 'bca', 'BcaC02g11095' => 'bca', 'BcaC03g14810' => 'bca', 'BcaC05g29039' => 'bca', 'BcaC08g43611' => 'bca', 'BcaNung06916' => 'bca', 'BolC2t08415H' => 'bol', 'BolC3t18770H' => 'bol', 'BolC4t23578H' => 'bol', 'BolC5t33933H' => 'bol', 'BolC6t36087H' => 'bol', 'BolC6t36774H' => 'bol', 'BolC6t39127H' => 'bol', 'BraA02t06463Z' => 'bra', 'BraA05t20449Z' => 'bra', 'BraA05t20657Z' => 'bra', 'BraA05t22286Z' => 'bra', 'BraA06t23252Z' => 'bra', 'BraA06t25804Z' => 'bra', 'BraA07t31007Z' => 'bra', 'C03p65180' => 'bna', 'C04p20530' => 'bna', 'C05p52500' => 'bna', 'C06p10130' => 'bna', 'C06p15820' => 'bna', 'C06p43120' => 'bna', 'CAN.G1190.31' => 'can', 'CAN.G1389.10' => 'can', 'CAN.G1389.8' => 'can', 'CAN.G1477.1' => 'can', 'CAN.G375.55' => 'can', 'CAN.G610.88' => 'can', 'CAN.G792.29' => 'can', 'CAN.G93.40' => 'can', 'CANSAT01G3169' => 'cansat', 'CANSAT11G1182' => 'cansat', 'CANSAT54G1405' => 'cansat', 'CANSAT64G0590' => 'cansat', 'CANSAT64G1462' => 'cansat', 'CARHR044790' => 'chi', 'CARHR089690' => 'chi', 'CARHR123440' => 'chi', 'CARHR217530' => 'chi', 'CARHR275680' => 'chi', 'Carub.0001s4367' => 'cru', 'Carub.0002s1344' => 'cru', 'Carub.0003s1442' => 'cru', 'Carub.0004s1127' => 'cru', 'Carub.0008s2260' => 'cru', 'Ca_01191_v3' => 'car', 'Ca_02945_v3' => 'car', 'Ca_05641_v3' => 'car', 'Ca_06725_v3' => 'car', 'Ca_21167_v3' => 'car', 'CBR_g22054' => 'cbr', 'CBR_g22082' => 'cbr', 'CBR_g26280' => 'cbr', 'CBR_g26401' => 'cbr', 'CBR_g3067' => 'cbr', 'CBR_g4181' => 'cbr', 'CBR_g54827' => 'cbr', 'CBR_g81580' => 'cbr', 'Cc01_g14720' => 'ccan', 'Cc03_g12550' => 'ccan', 'Cc04_g02040' => 'ccan', 'Cc05_g10630' => 'ccan', 'Cc06_g14140' => 'ccan', 'Cc11_g10160' => 'ccan', 'CDE01G0231' => 'cde', 'CDE02G0150' => 'cde', 'CDE04G0048' => 'cde', 'CDE05G1191' => 'cde', 'CDE06G1580' => 'cde', 'CDE08G0333' => 'cde', 'CDE08G0588' => 'cde', 'CDE08G1357' => 'cde', 'CDE10G0640' => 'cde', 'CDE12G0673' => 'cde', 'Cfa007982' => 'cfa', 'Cfa011759' => 'cfa', 'Cfa012907' => 'cfa', 'Cfa018597' => 'cfa', 'Cfa019507' => 'cfa', 'Ciclev10008984m.g' => 'ccl', 'Ciclev10012337m.g' => 'ccl', 'Ciclev10021239m.g' => 'ccl', 'Ciclev10026255m.g' => 'ccl', 'Ciclev10028985m.g' => 'ccl', 'Ciclev10032457m.g' => 'ccl', 'CiPaw.01G225800' => 'cil', 'CiPaw.02G141000' => 'cil', 'CiPaw.04G004500' => 'cil', 'CiPaw.08G001100' => 'cil', 'CiPaw.11G155400' => 'cil', 'CiPaw.12G110100' => 'cil', 'CiPaw.13G071300' => 'cil', 'CiPaw.16G064900' => 'cil', 'ClCG03G000280' => 'cla', 'ClCG08G005330' => 'cla', 'ClCG11G005220' => 'cla', 'ClCG11G012650' => 'cla', 'ClCG11G017130' => 'cla', 'COL.COLO4_03606' => 'col', 'COL.COLO4_10978' => 'col', 'COL.COLO4_11128' => 'col', 'COL.COLO4_18039' => 'col', 'COL.COLO4_30649' => 'col', 'COL.COLO4_38267' => 'col', 'Cpa.g.c36361' => 'cpa', 'Cpa.g.sc127.47' => 'cpa', 'Cpa.g.sc2.375' => 'cpa', 'Cpa.g.sc25.65' => 'cpa', 'Cpa.g.sc336.1' => 'cpa', 'Cpa.g.sc682.3' => 'cpa', 'Cpa.g.sc682.4' => 'cpa', 'CsaV3_1G036640' => 'csa', 'CsaV3_2G007820' => 'csa', 'CsaV3_4G032790' => 'csa', 'CsaV3_5G038960' => 'csa', 'CsaV3_6G003520' => 'csa', 'CSS0000737' => 'camsi', 'CSS0002294' => 'camsi', 'CSS0002312' => 'camsi', 'CSS0005010' => 'camsi', 'CSS0006711' => 'camsi', 'CSS0009776' => 'camsi', 'CSS0023437' => 'camsi', 'CSS0025525' => 'camsi', 'CSS0027668' => 'camsi', 'CSS0029835' => 'camsi', 'CSS0037827' => 'camsi', 'CSS0040988' => 'camsi', 'CSS0047783' => 'camsi', 'CSS0048360' => 'camsi', 'DCAR_007618' => 'dca', 'DCAR_010983' => 'dca', 'DCAR_012275' => 'dca', 'DCAR_012276' => 'dca', 'DCAR_019619' => 'dca', 'DCAR_020099' => 'dca', 'DCAR_020100' => 'dca', 'DCAR_020101' => 'dca', 'DCAR_020102' => 'dca', 'DCAR_026382' => 'dca', 'DCAR_030151' => 'dca', 'Dinv09662' => 'din', 'Dinv13354' => 'din', 'Dinv21087' => 'din', 'Dinv26701' => 'din', 'Dinv28686' => 'din', 'Dinv30387' => 'din', 'Dinv31639' => 'din', 'Dinv33907' => 'din', 'Dinv34869' => 'din', 'Dinv37922' => 'din', 'Dinv42793' => 'din', 'Dinv43308' => 'din', 'Duzib138G0760' => 'dzi', 'Duzib160G0845' => 'dzi', 'Duzib168G0310' => 'dzi', 'Duzib168G1742' => 'dzi', 'Duzib187G1457' => 'dzi', 'Duzib268G0886' => 'dzi', 'Duzib268G1582' => 'dzi', 'ECA234G1704' => 'eca', 'ECA236G2583' => 'eca', 'ECA238G3886' => 'eca', 'ECA240G4614' => 'eca', 'ECA246G1496' => 'eca', 'ECA247G0769' => 'eca', 'ECA247G2646' => 'eca', 'ECA248G2047' => 'eca', 'EL10Ac1g01302' => 'bvu', 'EL10Ac2g04124' => 'bvu', 'EL10Ac4g08436' => 'bvu', 'EL10Ac6g14406' => 'bvu', 'EL10Ac7g15775' => 'bvu', 'EL10Ac7g15905' => 'bvu', 'EL10Ac8g18879' => 'bvu', 'Eucgr.B02221' => 'egr', 'Eucgr.C00221' => 'egr', 'Eucgr.F03229' => 'egr', 'Eucgr.I02103' => 'egr', 'Eucgr.J02870' => 'egr', 'FAN02G2188' => 'fan', 'FAN02G3656' => 'fan', 'FAN05G2951' => 'fan', 'FAN05G3033' => 'fan', 'FAN07G1262' => 'fan', 'FAN07G1866' => 'fan', 'FAN09G1652' => 'fan', 'FAN09G2772' => 'fan', 'FAN11G0959' => 'fan', 'FAN11G2963' => 'fan', 'FAN12G2018' => 'fan', 'FAN12G2235' => 'fan', 'FAN12G3368' => 'fan', 'FAN14G1725' => 'fan', 'FAN14G2213' => 'fan', 'FAN16G0745' => 'fan', 'FAN16G3507' => 'fan', 'FAN17G0613' => 'fan', 'FAN21G0331' => 'fan', 'FAN21G1765' => 'fan', 'FAN22G1931' => 'fan', 'FAN25G0524' => 'fan', 'FAN25G2914' => 'fan', 'FvH4_3g17610' => 'fve', 'FvH4_3g39520' => 'fve', 'FvH4_4g10270' => 'fve', 'FvH4_4g27400' => 'fve', 'FvH4_6g33160' => 'fve', 'FvH4_6g45670' => 'fve', 'Glyma.01G128750' => 'gma', 'Glyma.02G230700' => 'gma', 'Glyma.08G149000' => 'gma', 'Glyma.13G090800' => 'gma', 'Glyma.13G350800' => 'gma', 'Glyma.14G197800' => 'gma', 'Glyma.15G023600' => 'gma', 'Glyma.15G269300' => 'gma', 'Glyma.17G170002' => 'gma', 'Glyma.18G279600' => 'gma', 'Gohir.A01G047000' => 'ghi', 'Gohir.A02G115500' => 'ghi', 'Gohir.A04G045400' => 'ghi', 'Gohir.A05G108400' => 'ghi', 'Gohir.A07G035600' => 'ghi', 'Gohir.A07G072900' => 'ghi', 'Gohir.A10G060900' => 'ghi', 'Gohir.D01G037700' => 'ghi', 'Gohir.D02G149851' => 'ghi', 'Gohir.D03G056500' => 'ghi', 'Gohir.D04G054700' => 'ghi', 'Gohir.D05G108600' => 'ghi', 'Gohir.D05G254850' => 'ghi', 'Gohir.D05G335800' => 'ghi', 'Gohir.D05G337400' => 'ghi', 'Gohir.D07G039600' => 'ghi', 'Gohir.D07G077500' => 'ghi', 'Gohir.D08G092300' => 'ghi', 'Gohir.D10G062000' => 'ghi', 'Gohir.D10G215733' => 'ghi', 'Gohir.D10G215766' => 'ghi', 'Gohir.D12G054500' => 'ghi', 'Gohir.D13G106800' => 'ghi', 'Gorai.001G041700' => 'gra', 'Gorai.001G082000' => 'gra', 'Gorai.001G211800' => 'gra', 'Gorai.002G046000' => 'gra', 'Gorai.003G059600' => 'gra', 'Gorai.005G168000' => 'gra', 'Gorai.006G047700' => 'gra', 'Gorai.008G085400' => 'gra', 'Gorai.009G112800' => 'gra', 'Gorai.009G359500' => 'gra', 'Gorai.009G361700' => 'gra', 'Gorai.011G066200' => 'gra', 'GSVIVG01011898001' => 'vvi', 'GSVIVG01013352001' => 'vvi', 'GSVIVG01014086001' => 'vvi', 'GSVIVG01016844001' => 'vvi', 'GSVIVG01021318001' => 'vvi', 'GSVIVG01021834001' => 'vvi', 'GSVIVG01024666001' => 'vvi', 'GSVIVG01036475001' => 'vvi', 'HanXRQChr02g0031721' => 'han', 'HanXRQChr03g0066201' => 'han', 'HanXRQChr03g0075401' => 'han', 'HanXRQChr04g0103751' => 'han', 'HanXRQChr07g0200161' => 'han', 'HanXRQChr12g0360621' => 'han', 'HanXRQChr15g0495361' => 'han', 'HanXRQChr17g0552061' => 'han', 'Haze_08444' => 'cav', 'Haze_14091' => 'cav', 'Haze_15940' => 'cav', 'Haze_17480' => 'cav', 'Haze_21265' => 'cav', 'Haze_24396' => 'cav', 'Hma1.2p1_0061F.1_g033940' => 'hma', 'Hma1.2p1_0325F.1_g126120' => 'hma', 'Hma1.2p1_0388F.1_g142260' => 'hma', 'Hma1.2p1_0516F.1_g170560' => 'hma', 'Hma1.2p1_0588F.1_g184430' => 'hma', 'Hma1.2p1_0713F.1_g207890' => 'hma', 'Hma1.2p1_1116F.1_g258940' => 'hma', 'Hma1.2p1_1233F.1_g268970' => 'hma', 'Hma1.2p1_2630F.1_g325720' => 'hma', 'HPP92_005171' => 'vpl', 'HPP92_006142' => 'vpl', 'HPP92_012416' => 'vpl', 'HPP92_014257' => 'vpl', 'HPP92_021802' => 'vpl', 'HPP92_022845' => 'vpl', 'HPP92_026124' => 'vpl', 'Hund03460' => 'sun', 'Hund05032' => 'sun', 'Hund14449' => 'sun', 'Hund20810' => 'sun', 'Hund20860' => 'sun', 'Hund25065' => 'sun', 'Lalb_Chr01g0015161' => 'lal', 'Lalb_Chr02g0158431' => 'lal', 'Lalb_Chr04g0252021' => 'lal', 'Lalb_Chr06g0174711' => 'lal', 'Lalb_Chr13g0300591' => 'lal', 'Lalb_Chr14g0372831' => 'lal', 'Lalb_Chr21g0318031' => 'lal', 'Lalb_Chr22g0351761' => 'lal', 'Lj1A127G60' => 'lonja', 'Lj1A822T52' => 'lonja', 'Lj1g0019367' => 'lja', 'Lj3C1015T5' => 'lonja', 'Lj3g0009813' => 'lja', 'Lj3g0025148' => 'lja', 'Lj4C128T9' => 'lonja', 'Lj4g0026460' => 'lja', 'Lj5C46T6' => 'lonja', 'Lj7A465T50' => 'lonja', 'Lj7A465T51' => 'lonja', 'Lj9A726T42' => 'lonja', 'LjContig00141g0019488' => 'lja', 'Lsat_1_v5_gn_1_36001' => 'lsa', 'Lsat_1_v5_gn_2_86420' => 'lsa', 'Lsat_1_v5_gn_3_59260' => 'lsa', 'Lsat_1_v5_gn_4_80641' => 'lsa', 'Lsat_1_v5_gn_5_133560' => 'lsa', 'Lsat_1_v5_gn_5_174501' => 'lsa', 'Lsat_1_v5_gn_5_71520' => 'lsa', 'Lsat_1_v5_gn_7_100260' => 'lsa', 'Lsat_1_v5_gn_7_51040' => 'lsa', 'Lsat_1_v5_gn_9_18420' => 'lsa', 'Manes.01G107000' => 'mes', 'Manes.02G064700' => 'mes', 'Manes.02G216400' => 'mes', 'Manes.03G078500' => 'mes', 'Manes.04G139000' => 'mes', 'Manes.11G027300' => 'mes', 'Manes.14G163900' => 'mes', 'MBI03_g33624_MAGBIO' => 'mbi', 'MBI08_g14843_MAGBIO' => 'mbi', 'MBI13_g00889_MAGBIO' => 'mbi', 'MBI16_g36639_MAGBIO' => 'mbi', 'MBI16_g44508_MAGBIO' => 'mbi', 'MD03G1060200' => 'mdo', 'MD03G1250800' => 'mdo', 'MD09G1080900' => 'mdo', 'MD11G1271000' => 'mdo', 'MD13G1042300' => 'mdo', 'MD13G1102500' => 'mdo', 'MD16G1043100' => 'mdo', 'MD16G1260800' => 'mdo', 'MD17G1072000' => 'mdo', 'MD17G1175100' => 'mdo', 'Medtr2g060900' => 'mtr', 'Medtr2g100240' => 'mtr', 'Medtr4g129730' => 'mtr', 'Medtr5g072760' => 'mtr', 'Medtr7g019180' => 'mtr', 'MELO3C004106.2' => 'cme', 'MELO3C011573.2' => 'cme', 'MELO3C020505.2' => 'cme', 'MELO3C022073.2' => 'cme', 'MELO3C025674.2' => 'cme', 'Migut.D00852' => 'egut', 'Migut.D00973' => 'egut', 'Migut.E00339' => 'egut', 'Migut.H00552' => 'egut', 'Migut.H02029' => 'egut', 'Migut.J01408' => 'egut', 'Migut.J01409' => 'egut', 'MSTRG.13530' => 'ama', 'MSTRG.14253' => 'ama', 'MSTRG.21235' => 'ama', 'MSTRG.22592' => 'ama', 'MSTRG.2950' => 'ama', 'MSTRG.6174' => 'ama', 'Nitab4.5_0000046g0050' => 'nta', 'Nitab4.5_0000874g0010' => 'nta', 'Nitab4.5_0001140g0080' => 'nta', 'Nitab4.5_0001324g0020' => 'nta', 'Nitab4.5_0001427g0070' => 'nta', 'Nitab4.5_0003289g0050' => 'nta', 'Nitab4.5_0003373g0070' => 'nta', 'Nitab4.5_0003618g0010' => 'nta', 'Nitab4.5_0004656g0010' => 'nta', 'Nitab4.5_0005281g0020' => 'nta', 'Nitab4.5_0012182g0010' => 'nta', 'Nn2g10984' => 'nnu', 'Nn2g14738' => 'nnu', 'Nn3g17632' => 'nnu', 'Nn3g17833' => 'nnu', 'Nn3g17835' => 'nnu', 'Nn3g20957' => 'nnu', 'Nn4g23829' => 'nnu', 'Nn6g34387' => 'nnu', 'Oeu002510.1' => 'oeu', 'Oeu007108.1' => 'oeu', 'Oeu010036.1' => 'oeu', 'Oeu033428.1' => 'oeu', 'Oeu034089.3' => 'oeu', 'Oeu034247.1' => 'oeu', 'Oeu045645.2' => 'oeu', 'Os02g0192100' => 'osa', 'Os03g0818000' => 'osa', 'Os04g0479100' => 'osa', 'Os07g0508200' => 'osa', 'Os08g0430100' => 'osa', 'Os12g0193100' => 'osa', 'Peaxi162Scf00019g00715' => 'pax', 'Peaxi162Scf00038g01435' => 'pax', 'Peaxi162Scf00111g10127' => 'pax', 'Peaxi162Scf00239g00098' => 'pax', 'Peaxi162Scf00382g00068' => 'pax', 'Peaxi162Scf00446g00014' => 'pax', 'Peaxi162Scf00479g00436' => 'pax', 'Peaxi162Scf00934g00136' => 'pax', 'PGR004G2120' => 'pgr', 'PGR031G0859' => 'pgr', 'PGR102G2742' => 'pgr', 'PGR102G2939' => 'pgr', 'PGSC0003DMG400002502' => 'stu', 'PGSC0003DMG400011167' => 'stu', 'PGSC0003DMG400014548' => 'stu', 'PGSC0003DMG400026557' => 'stu', 'Phvul.003G152000' => 'pvu', 'Phvul.005G039800' => 'pvu', 'Phvul.005G160200' => 'pvu', 'Phvul.006G003500' => 'pvu', 'Phvul.008G021400' => 'pvu', 'Phvul.008G257500' => 'pvu', 'Potri.001G281400' => 'ptr', 'Potri.001G382700' => 'ptr', 'Potri.003G037900' => 'ptr', 'Potri.006G178100' => 'ptr', 'Potri.009G076700' => 'ptr', 'Potri.017G109700' => 'ptr', 'Potri.018G100100' => 'ptr', 'Pp3c18_13290' => 'ppa', 'Pp3c18_13310' => 'ppa', 'Pp3c3_24050' => 'ppa', 'Pp3c8_1900' => 'ppa', 'Prupe.1G098700' => 'ppe', 'Prupe.1G310800' => 'ppe', 'Prupe.3G051000' => 'ppe', 'Prupe.3G242800' => 'ppe', 'Prupe.4G155500' => 'ppe', 'Prupe.6G050600' => 'ppe', 'Prupe.8G181400' => 'ppe', 'Psat0s1163g0280' => 'psa', 'Psat1g128080' => 'psa', 'Psat3g192000' => 'psa', 'Psat5g293360' => 'psa', 'Psat6g139640' => 'psa', 'PSO017G6167' => 'pso', 'PSO063G4214' => 'pso', 'PSO104G0126' => 'pso', 'PSO210G6240' => 'pso', 'PSO339G0819' => 'pso', 'PSO349G0156' => 'pso', 'PSO384G4265' => 'pso', 'PSO541G2069' => 'pso', 'PSO765G0093' => 'pso', 'PSO782G4516' => 'pso', 'QL01p040006' => 'qlo', 'QL01p042725' => 'qlo', 'QL02p053607' => 'qlo', 'QL02p095373' => 'qlo', 'QL05p014694' => 'qlo', 'QL08p024827' => 'qlo', 'RcHm_v2.0_Chr2g0142861' => 'rch', 'RcHm_v2.0_Chr2g0146461' => 'rch', 'RcHm_v2.0_Chr2g0163821' => 'rch', 'RcHm_v2.0_Chr4g0405071' => 'rch', 'RcHm_v2.0_Chr4g0435211' => 'rch', 'RcHm_v2.0_Chr5g0029311' => 'rch', 'RcHm_v2.0_Chr5g0071291' => 'rch', 'RcHm_v2.0_Chr7g0199571' => 'rch', 'Rhsim01G0240100' => 'rsi', 'Rhsim06G0074800' => 'rsi', 'Rhsim09G0108200' => 'rsi', 'Rhsim10G0065800' => 'rsi', 'Rhsim12G0205300' => 'rsi', 'RhsimUnG0206200' => 'rsi', 'Sabra03G0025600' => 'sbr', 'Sabra06G0135600' => 'sbr', 'Sabra09G0058500' => 'sbr', 'Sabra16G0252400' => 'sbr', 'Sabra16G0294900' => 'sbr', 'Sabra17G0091800' => 'sbr', 'SalBow6G4852' => 'sbo', 'Sc03g0010740' => 'sci', 'Sc08g0005460' => 'sci', 'Sc11g0003330' => 'sci', 'Sc12g0010200' => 'sci', 'Sc15g0000100' => 'sci', 'Sc17g0004240' => 'sci', 'Sc21g0005200' => 'sci', 'Sed0000394' => 'sed', 'Sed0005412' => 'sed', 'Sed0016655' => 'sed', 'Sed0019393' => 'sed', 'Sed0020191' => 'sed', 'Sed0023626' => 'sed', 'Sed0026770' => 'sed', 'SEGI_00800' => 'sgi', 'SEGI_02504' => 'sgi', 'SEGI_10988' => 'sgi', 'SGA_v2.0_scaffold127G33951' => 'sas', 'SGA_v2.0_scaffold130G34257' => 'sas', 'SGA_v2.0_scaffold166G38343' => 'sas', 'SGA_v2.0_scaffold170G38759' => 'sas', 'SGA_v2.0_scaffold196G41003' => 'sas', 'SGA_v2.0_scaffold45G16978' => 'sas', 'SGA_v2.0_scaffold71G23772' => 'sas', 'SHI03016' => 'shi', 'SHI19196' => 'shi', 'SHI20462' => 'shi', 'SHI23906' => 'shi', 'SHI23907' => 'shi', 'SHI27567' => 'shi', 'SHI29323' => 'shi', 'SHI29326' => 'shi', 'SHI29329' => 'shi', 'SHI30500' => 'shi', 'SHI30994' => 'shi', 'SHI39231' => 'shi', 'SHI41571' => 'shi', 'SMO143G0084' => 'smo', 'Solyc02g065630.4' => 'sly', 'Solyc03g121500.3' => 'sly', 'Solyc05g009290.4' => 'sly', 'Solyc07g006260.3' => 'sly', 'Solyc07g062110.3' => 'sly', 'Solyc09g055700.4' => 'sly', 'Sopen02g015830' => 'spe', 'Sopen03g040310' => 'spe', 'Sopen05g005040' => 'spe', 'Sopen07g002350' => 'spe', 'Sopen07g030370' => 'spe', 'Sopen09g018970' => 'spe', 'Sp1g40840' => 'spa', 'Sp2g25110' => 'spa', 'Sp3g12980' => 'spa', 'Sp4g12710' => 'spa', 'Sp5g22100' => 'spa', 'TAR371G0119' => 'tar', 'TAR374G0340' => 'tar', 'TAR383G0159' => 'tar', 'TAR383G0631' => 'tar', 'TAR622G0105' => 'tar', 'TAR624G1368' => 'tar', 'TAR626G0065' => 'tar', 'TAR626G0918' => 'tar', 'TAR627G1038' => 'tar', 'TAR629G1485' => 'tar', 'TAR629G3406' => 'tar', 'TAR633G2814' => 'tar', 'TAR684G0002' => 'tar', 'THA.LOC104800760' => 'tha', 'THA.LOC104811826' => 'tha', 'THA.LOC104822582' => 'tha', 'THA.LOC104822659' => 'tha', 'Thecc.02G231100' => 'tca', 'Thecc.04G145000' => 'tca', 'Thecc.06G109500' => 'tca', 'Thecc.07G134900' => 'tca', 'Thecc.09G158800' => 'tca', 'Thecc.09G355800' => 'tca', 'Thhalv10004852m.g' => 'esa', 'Thhalv10011750m.g' => 'esa', 'Thhalv10017024m.g' => 'esa', 'Thhalv10018757m.g' => 'esa', 'Thhalv10021120m.g' => 'esa', 'TPR.G11742' => 'tpr', 'TPR.G27989' => 'tpr', 'TPR.G3293' => 'tpr', 'TPR.G6562' => 'tpr', 'TWI31G0085' => 'twi', 'TWI34G1721' => 'twi', 'TWI34G1751' => 'twi', 'TWI38G0350' => 'twi', 'TWI38G0621' => 'twi', 'TWI39G0754' => 'twi', 'TWI63G1455' => 'twi', 'unitig_10.g29678' => 'ugi', 'unitig_32.g11576' => 'ugi', 'unitig_747.g21456' => 'ugi', 'unitig_8.g3980' => 'ugi', 'vmacro05587' => 'vma', 'vmacro09419' => 'vma', 'vmacro10557' => 'vma', 'vmacro14616' => 'vma', 'vmacro16990' => 'vma', 'vmacro20273' => 'vma', 'vmacro22333' => 'vma', 'vmacro22857' => 'vma', 'VMungo0540G1604' => 'vmu', 'VMungo0647G1673' => 'vmu', 'VMungo1080G0610' => 'vmu', 'VMungo1080G1632' => 'vmu', 'VMungo1215G1661' => 'vmu', 'VMungo1383G2138' => 'vmu', 'Zm00001eb006120' => 'zma', 'Zm00001eb041110' => 'zma', 'Zm00001eb054560' => 'zma', 'Zm00001eb062350' => 'zma', 'Zm00001eb079590' => 'zma', 'Zm00001eb093150' => 'zma', 'Zm00001eb105740' => 'zma', 'Zm00001eb164030' => 'zma', 'Zm00001eb196520' => 'zma', 'Zm00001eb206250' => 'zma', 'Zm00001eb211990' => 'zma', 'Zm00001eb245200' => 'zma', 'Zm00001eb322370' => 'zma', 'Zm00001eb325670' => 'zma', 'Zm00001eb330870' => 'zma', 'Zm00001eb424930' => 'zma' ) $gf_id = 'HOM05D000842' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000842' ) $data_identifier = 'HOM05D000842' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 13, 'aar' => (int) 5, 'aag' => (int) 1, 'ach' => (int) 11, 'amhyb' => (int) 5, 'aly' => (int) 6, 'aox' => (int) 7, 'arhy' => (int) 12, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 7, 'cqu' => (int) 12, 'bca' => (int) 12, 'bol' => (int) 7, 'bra' => (int) 7, 'can' => (int) 8, 'cansat' => (int) 5, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 8, 'ccan' => (int) 6, 'cde' => (int) 10, 'cfa' => (int) 5, 'ccl' => (int) 6, 'cil' => (int) 8, 'cla' => (int) 5, 'col' => (int) 6, 'cpa' => (int) 7, 'csa' => (int) 5, 'camsi' => (int) 14, 'dca' => (int) 11, 'din' => (int) 12, 'dzi' => (int) 7, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 5, 'fan' => (int) 23, 'fve' => (int) 6, 'gma' => (int) 10, 'ghi' => (int) 23, 'gra' => (int) 12, 'vvi' => (int) 8, 'han' => (int) 8, 'cav' => (int) 6, 'hma' => (int) 9, 'vpl' => (int) 7, 'sun' => (int) 6, 'lal' => (int) 8, 'lonja' => (int) 8, 'lja' => (int) 5, 'lsa' => (int) 10, 'mes' => (int) 7, 'mbi' => (int) 5, 'mdo' => (int) 10, 'mtr' => (int) 5, 'cme' => (int) 5, 'egut' => (int) 7, 'ama' => (int) 6, 'nta' => (int) 11, 'nnu' => (int) 8, 'oeu' => (int) 7, 'osa' => (int) 6, 'pax' => (int) 8, 'pgr' => (int) 4, 'stu' => (int) 4, 'pvu' => (int) 6, 'ptr' => (int) 7, 'ppa' => (int) 4, 'ppe' => (int) 7, 'psa' => (int) 5, 'pso' => (int) 10, 'qlo' => (int) 6, 'rch' => (int) 8, 'rsi' => (int) 6, 'sbr' => (int) 6, 'sbo' => (int) 1, 'sci' => (int) 7, 'sed' => (int) 7, 'sgi' => (int) 3, 'sas' => (int) 7, 'shi' => (int) 13, 'smo' => (int) 1, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 5, 'tar' => (int) 13, 'tha' => (int) 4, 'tca' => (int) 6, 'esa' => (int) 5, 'tpr' => (int) 4, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 8, 'vmu' => (int) 6, 'zma' => (int) 16 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb424930' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1